
Originally Posted by
Zero
Missing eyes from the massacre would alert Konoha (especially the top) that there exist a Sharingan hunter, someone who is collecting power of one of the strongest clans in the village (which is a part of the Sage's power). Do you think that they wouldn't do anything ? Heck, there almost broke a war, because one of the Byakugan's user were almost abducted and you are saying that a massive amount of Sharingans could just disappear and no one would give a thought ?
All those years of Tobi/Madara planing, hiding and working from the shadows, could be lost, if there was a clue that someone from outside has stolen the sharingans of the dead Uchiha. Danzou could take them, because it was his ANBU that was doing the investigation (actually, a clean up as the top clearly knew what happened) and probably it was his men that were assigned to take care of the bodies.
We don't know the exact number of the Uchiha clan members that have awakened a sharingan. There probably were those that couldn't be recovered, because of the damage caused by fighting. It's even possible that the eyes, that weren't activated at their death or at a time of transplant, can't be used by non-Uchiha.
The way you said it, sounded like he took his eye from his dead body and that is not true. Both of his eyes were removed when he was still alive, the other one was given to Itachi, after which he killed himself (?) and faked the destruction of his eye in the process.
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